R

This Tool plugin provides an interface to the R engine finely integrated within Alambic.

A number of functions are made available for common operations like:

knitting a rmarkdown document to html snippets (incs),
knitting a rmarkdown document to a PDF file,
knitting a rmarkdown document to a complete HTML file,
knitting a r document to an image.

Check the plugin Perl documentation in the perldoc section.

Basic information

ID: r_sessions
Name: R sessions
Abilities: methods.
Description: Runs R for plugins, computes data and generates files.
Parameters:
- path_r The absolute path to the R executable if it cannot be found in the $PATH.

Provides

Methods

knit_rmarkdown_inc Function to knit a rmarkdown document to a html snippet (i.e. without <html> tags).
knit_rmarkdown_pdf Function to knit a rmarkdown document to a pdf document.
knit_rmarkdown_html Function to knit a rmarkdown document to a full html document (i.e. a complete HTML document including <html> tags).
knit_rmarkdown_images Function to knit a r document to image(s).